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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015906652.1_cds_XP_016456806.1_50602
CDS Infomation

[gene=LOC107780738] [db_xref=GeneID:107780738] [protein=soluble starch synthase 1, chloroplastic/amyloplastic isoform X3] [protein_id=XP_016456806.1] [location=join(4230..4539,5774..6141,6494..6594,10641..10722,11498..11671,11877..11958,12209..12300,12594..12656,12739..12828,13436..13560,13645..13753,13834..13889,14640..14679,14766..14924)] [gbkey=CDS]
Sequence

ATGATTGTTGATCTTACAGCAGGCGCCGGTACCCAAATGGGGTCACTGCAAACATCAGCA
AATCTTTCTTGTTTATGTGTATCAGTTAGAGGAGGTGTACAGGGTTTTAGTACTGTAGTA
AGGCAAGTGGGGTTCAATTCTTGGTTATTGCAGGGGCGAATTAGAAGCAGAAAGATCCAA
TCTTTATGTGTTAGAAGTTCTTTTAATAATGCTGGTGGTAGTAGTTCTTCAGAGGAGAAG
GGTCTTCTTTTGGGTGCTGAGAGGGATAGCTCTGGCTCTGTTGTTGGTTTTCAATTGATT
CCCCATTCTGTTACAGGTGATGCAACAATCGTTGAATCTCATGATATTGTAGCTGATGAT
AGAGATGACTTAAGTGAGGATGCTGAACAGAAGGAGAAACCCCCAACCAAATTAACATTC
AATATCATTTTTGTTACTGCTGAAGCAGCTCCGTATTCTAAGACCGGTGGCTTAGGAGAT
GTTTGTGGCTCTTTGCCTGTAGCACTAGCTTCTCGGGGTCATCGTGTAATGGTCGTCTCA
CCCAGGTATCTGAATGGAGGTCCTTCCGATGAAAAGTATGCTAATACTGTTGACCTTGAT
GTGCGGGCTACAATCCATTGTTTTGGTGGTCCGCAGGAAGTAGCCTTCTACCATGAATAC
AGAGCAGGAGTTGACTGGAAGTACACTGCTCTTGCTATCAGGTATTTGTGGACCACCCTT
CTTATCGCAGACCTGGAACGCCATATGGTGATATTTATGGTGCATTTGGTGATAATCAGA
CTTTTAGCAGCCAAGTATCGTCCTTATGGTGTTTACAAGGATGCTCGTAGTATTGTCTTA
ATACACAACATTGCACATCAGGGAGTGGAGCCTGCAGCAACCTACCATAATCTGGGATTG
CCTCCAGAATGGTATGGAGCACTTGAATGGATATTTCCCACGTGGGCAAGGGCGCATGCG
CTTGACACTGGTGAAACAGTCAATGTTTTGAAAGGGGCAGTCGCAATTGCTGATCGGATA
CTGACAGTTAGCCAGGGGTACTCATGGGAAATAACAACTCCTGAAGGGGGATATGGATTA
CATGAGCTGTTGAGCAGTAGAAAGTCAGTTCTTAATGGAATTACTAATGGAATCGATGTT
AGTGATTGGAACCCATCGACAGATGAGCATACTGCTTCACATTACTCCATCCGTGACCTC
TCTGGAAAGGTTAAGTGCAAGACTGCTCTGCAAAAGGAGTTGGGCCTTCCAATTCGACCT
GATTGTCCGCTGATTGGATTTATTGGAAGGCTGGACTATCAGAAAGGTGTTGACATAATC
CTGTCAGCAATTCCAGAACTTATGCAGGATGATGTCCAATTTGTAATGCTTGGATCTGGT
GAGAAACAATATGAAGATTGGATGAGACATACAGAAAATCTCTTCAAAGACAAATTCCGC
GGTTGGGTTGGATTTAATGTTCCAGTTTCTCATAGGATAACAGCAGGCTGCGACATACTA
TTGATGCCCTCAAGATTCGAACCTTGTGGTTTAAACCAGTTGTATGCAATGAGATATGGC
ACCATACCTGTCGTTCATAGCACTGGGGGCCTAAGAGACACGGTGAAGGATTTTAATCCA
TATGCTCAAGAAGGAGAAGGTGAAGGTACCGGGTGGACATTTTCTCCTCTATCGAGAGAA
AAGTTGCTTGATACACTGAAGGTAGCGATTAGCACTTACATAGAACATAAGTCATCTTGG
GAGGGGTTGATGAAAAGAGGAATGGAAAGGGACTATTCCTGGGAAAATGCGGCCATTCAG
TACGAGCAAGTATTTGAATGGGCATTTATAGATCCTCCATATGTCAGATGA

Peptide Sequence

PEP ID

XP_016456806.1
PEP Infomation

PREDICTED: soluble starch synthase 1, chloroplastic/amyloplastic isoform X3 [Nicotiana tabacum]
Sequence

MIVDLTAGAGTQMGSLQTSANLSCLCVSVRGGVQGFSTVVRQVGFNSWLLQGRIRSRKIQ
SLCVRSSFNNAGGSSSSEEKGLLLGAERDSSGSVVGFQLIPHSVTGDATIVESHDIVADD
RDDLSEDAEQKEKPPTKLTFNIIFVTAEAAPYSKTGGLGDVCGSLPVALASRGHRVMVVS
PRYLNGGPSDEKYANTVDLDVRATIHCFGGPQEVAFYHEYRAGVDWKYTALAIRYLWTTL
LIADLERHMVIFMVHLVIIRLLAAKYRPYGVYKDARSIVLIHNIAHQGVEPAATYHNLGL
PPEWYGALEWIFPTWARAHALDTGETVNVLKGAVAIADRILTVSQGYSWEITTPEGGYGL
HELLSSRKSVLNGITNGIDVSDWNPSTDEHTASHYSIRDLSGKVKCKTALQKELGLPIRP
DCPLIGFIGRLDYQKGVDIILSAIPELMQDDVQFVMLGSGEKQYEDWMRHTENLFKDKFR
GWVGFNVPVSHRITAGCDILLMPSRFEPCGLNQLYAMRYGTIPVVHSTGGLRDTVKDFNP
YAQEGEGEGTGWTFSPLSREKLLDTLKVAISTYIEHKSSWEGLMKRGMERDYSWENAAIQ
YEQVFEWAFIDPPYVR

Transcript Sequence

Gene sequence data has not been registered.